Scaffold Ga0066851_10129920

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10129920
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 809
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010403	Metagenome	304	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_101299202	F010403	AGG	LIKPKEIGTIVPRSKFNNHVFYRELEISKDRIKYDTWRTGTFNKENLIRDIEEEFKVNGASDKVPPFQTKTNLYERVKDKPHWNDLYKRIKHALLRYHTKEFILKESWANKAVENSSFGFHTHDRDITCCYYAKSNYPEFGTNIDEEVIIPSLEDSLLIFDGKTRHQLCNLPFELAVHPHNHRYSIVFDFNIDKSTNPDNIAK*