Scaffold Ga0066851_10094529

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10094529
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 976
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F042854	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_100945291	F019113	N/A	MSKRFEVGDLVRDNLNEGAGNYGLGVIVKIDVPGLLGEKWGRSDPPSDHDIPGKRYAVYFNKFERTITFHGDYLEKV*
Ga0066851_100945292	F042854	GAG	MEIILKKFDKGLERYTRNRMRELRGDTPASWPEDPYVEAYTSRRIRELRLEHEMAQREIDLDNVALGGYTVVTLEAYDGKS*
Ga0066851_100945293	F013357	GGAGG	MARARYIPGALVEARNSKYGKGFGIIVAGPWSDTKAASQYRDLANEQAWFKVHWFEKPGNVDSYYMRRGNGQIDMSKNQIKLVRKK*