Basic Information | |
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Taxon OID | 3300005427 Open in IMG/M |
Scaffold ID | Ga0066851_10029027 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1985 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F002715 | Metagenome / Metatranscriptome | 535 | Y |
F004439 | Metagenome | 438 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066851_100290271 | F002715 | N/A | VRGKQIETLLQKLDLTADKLQQLTVQIIKLNTRQEDYLRHTSSMNDEFKLLHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD* |
Ga0066851_100290273 | F000245 | AGG | MKTFSRLKEGRLDDKMDKAVSNEIKKRKLARFPVNATDDYKMKTKKNLAFKFPTPSGEMMFHVYLRKMAPPASKDTKAFNYDIEDK* |
Ga0066851_100290274 | F004439 | GAG | MKSFIQQQHLDEVVLRSSLSDMLFQPKITEYNRLMIPISSSMYKRIWPDNIRATVFHTTDVEGVKKIAKLQGKKTQISAFFAMQSRYMEIGVATQGGVHAVLEMDADILLSAKGDIMSYVDRGGRRWTTIADLQETSRYTNFGKVNRDIEKMFSALVPKYLTRGEFQDYSTIFQIWHQAKRKVDSKTMSLIIKDYMDGMEKVIKDNLDTFTSVMRSYVKKRQSDYSWDEQIVNNIKVKKAHLFRLKLDKDGENSLIPEQDDLIRFIDSKNWAYTRWDAAIELEIYTRDIANKELEK* |
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