Scaffold Ga0066851_10006206

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10006206
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5055
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062673	Metagenome	130	N
F077175	Metagenome	117	N
F080485	Metagenome	115	N
F098042	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_1000620612	F098042	GGGGG	MSKMGNIHYQAQEDAISGIMDKRSYLDEYGDDALDIWEEFNGEEPSDDRKQSFFWLSQQPQTDREIQTEHWADDRRIVDI*
Ga0066851_1000620614	F077175	N/A	MNIEQDKLDLWAEINRLRTEVETLTDLLKTLEEKINVLVRDVHWRNN*
Ga0066851_1000620615	F062673	N/A	DDDSLVDLANNMGIEDLCKLINIFQDRICVFDAKNKIVHELRDTTEYFSAVLNGAGIQLSVNDGEE*
Ga0066851_100062067	F080485	AGGA	MIVNRIIYRDKPKEAIFRTLVQTFWKDNPDCEVATISITKDKPKRSDAQNRLFHTWRDIIAGEMGESKEETKNLIKNQFSIESTKDLEVAEFVEFLRDIDDFFGGEYQIKLPRNEDYHLAMYNVYKKS*