Scaffold Ga0066851_10004579

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10004579
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6031
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006959	Metagenome / Metatranscriptome	361	Y
F013575	Metagenome	270	Y
F053334	Metagenome	141	Y
F077400	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_1000457913	F077400	AGTAGG	MSGFGYRPSTFVYPVQTPEQRKNEEDPRVQVSEMLQGPERGVNESYEDYKLRMKVEYKLTRDYLKGYLIGK*
Ga0066851_1000457914	F053334	GAGG	MAKKKKVPFHIQNNLKEYSYEDGGLKITFWAKDDKDAELYKKKVGAK*
Ga0066851_100045795	F013575	GAGG	MPDLTWFYFHCVLALIIIVKDHNGTLEESLNKFESKIGLYTYVDTSHREEVPFYIPPIEEEIDSTFILPDRLKLKETEDDSSRTA*
Ga0066851_100045796	F006959	AGGAG	MYFETQVIFTEEIPTKNGVREKKTRRAFLVECDSVSVAEAKVNEVLKDSPYPFEVKVAKESKIVEVIDA*