Scaffold Ga0066847_10090112

Overview

Basic Information

• Taxon OID: 3300005426
• Scaffold ID: Ga0066847_10090112
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 962
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077182	Metagenome / Metatranscriptome	117	N
F093709	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066847_100901121	F077182	GGCGG	MTTAAQMKTALGLTDSQLTKVTAYLDRVSPKVDDSDPPEARANTVDDFKDHIVSHYTSLVQSDLKQQVAAPAFD*
Ga0066847_100901122	F093709	AGGA	MAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRVSVINAANPVDSTAVAS*