Scaffold Ga0066826_10049517

Overview

Basic Information

• Taxon OID: 3300005424
• Scaffold ID: Ga0066826_10049517
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1612
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074003	Metagenome	120	N
F092692	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066826_100495172	F074003	GAG	MRQSRASNNQTELLSIVQSIQRHLESTRKQQNRITPAIARTFAMKIDNSIRKNGSSAISSNSLSTKIDYIARMLMGVSSANLMNLSVSNKGGLLAKATLLKGIMSEEHLNSLTTYLSLLRDTPAPVSFQNHMIVNDLYASLTQDNTNQRLP*
Ga0066826_100495173	F092692	GAG	MNFYEIKLNVVIDRNPPQALKHLRSALDELFDKNRHLNTGKVNLVSIEEKKKR*