NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066829_10012244

Scaffold Ga0066829_10012244


Overview

Basic Information
Taxon OID3300005422 Open in IMG/M
Scaffold IDGa0066829_10012244 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2793
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088728Metagenome109N
F099130Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0066829_100122443F099130N/AMKREYKDIYIVHDAEGDVQRITERHQDIAKYVVAVTAYGQAGKMRRVASSLNEMVRKRGEEAIFKVVRSDGKHMVVRKLIPDDKLEFIDHTLLDWEDIE*
Ga0066829_100122445F088728GGAGMRKLVLLFIITISFFVASFCFADDNKSPIFQGKTDTECIKETGVDLRWVESFKTDNYVHYVNRPVENALVCHKKEMLLFVIKGFEEIYVICGQEYSDKTQNWQLFEVDIYNNEDAFTKRYREMLCELATMIPESEKKCIIKND*

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