Scaffold Ga0068882_1757887

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068882_1757887

Scaffold Ga0068882_1757887

Overview

Basic Information
Taxon OID	3300005421 Open in IMG/M
Scaffold ID	Ga0068882_1757887 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	648
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031366	Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068882_17578872	F031366	N/A	GEGKTASQGLQMKMAKLGSDYSKFLSFWNLAKEVRDELRPTIEPSFEAVWSQFAEMGGSRKFPMMWPQFLLYSIVDDINEFAQMSPNQQATNMGMLFDLGMDYPARVKEARGIAGLDRAEFDAAGQTLRQLQAQYPQSQN*

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