Scaffold Ga0068883_1004658

Overview

Basic Information

• Taxon OID: 3300005419
• Scaffold ID: Ga0068883_1004658
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1364
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002353	Metagenome / Metatranscriptome	567	Y
F006051	Metagenome / Metatranscriptome	382	Y
F011734	Metagenome / Metatranscriptome	287	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068883_10046581	F002353	N/A	VVFPVLVADVDVREDSIFIRLRKEEVVCEDQDTSKRVSSIDVLEPVVEKVPEIGSEVTVPLETIPEDLIFESGEAFFLEGVDNIPMEELFSGSHGDVSLAGSSDITGISVDTVLDLNLAS
Ga0068883_10046582	F006051	GAG	MGRFVDAICCHILEKYMSSYMRERNVDALLVLRNENKWAMTGKYLTFSFHKFIS*
Ga0068883_10046583	F011734	AGGA	MSRQLIVGNQGRTHQVGAYQGSFRGRERIAYQDLPSIHEIEQILEQLTANITLRTEDIPKRPITLPPIYTELSEIDVYTEMARL