NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066856_10102969

Scaffold Ga0066856_10102969


Overview

Basic Information
Taxon OID3300005404 Open in IMG/M
Scaffold IDGa0066856_10102969 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1248
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007697Metagenome346N
F016883Metagenome244N

Sequences

Protein IDFamilyRBSSequence
Ga0066856_101029691F016883GAGLIEKSEENTNKSNTTFSKAWLEKKIMCGLCNFGCCNHQNFHVEITEKEQEKYKKEFGLDLELEWPQNGCCDLLSKDGTGCTLGEDRPVFCKTYPLVENKTGRVVINNWAYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRDELILDDNIENVVHQIWLQSKEALIETYGEEFYEKIKLEMKQTIKHEFF
Ga0066856_101029692F007697N/ACITAAVAKYFGLKCLVTIPYYPDHIRDSYRVNASLSQKFGAKVYGVGNPNISGPELDAKKLVVETGYFQIKFGMNGFQVMNTVAQQVKNVPDDVETVVGIAGSGLSMLGVAMGTKIWNKNIKTIHPVALSDYVNKNKKQSYDNLPDKYKFDGDFNVVQSYYPYQHKLKLDEDIEFDQTYEAKAWDWMVKNIKPSKKVLFWDVGIKEYDLDYIEPINWHKSEYEKIIDREIRRKHEQVEHNFF*

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