Scaffold Ga0066856

Basic Information
Taxon OID	3300005404 Open in IMG/M
Scaffold ID	Ga0066856_10000015 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005404 Open in IMG/M

Scaffold ID

Ga0066856_10000015 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52703
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (86.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

52703

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (86.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F042025	Metagenome / Metatranscriptome	159	Y
F068147	Metagenome / Metatranscriptome	125	N
F090893	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066856_1000001520	F009293	GGAG	MTRIAKDIIAKNDFVVNVFDYNNDKIFDTDELYAAFESGWPVVIQNLPIEGLDYQYYDDLPDWTIEDNKWIMPWYNSHIKNRTRLMLERGWNDEQIDIFHKKHKQANNAWNELFDKMFPKYKTTERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKRPRVLTFGPDLEQLYHKYYWDFNLKELDKNNVHTFISEMRNRCVWNEKKWDQFHHPLHYITFNPGDIWFFNAQWITHQIVFGTKLQCFEADILNDSLIYPELCMAERIKKL*
Ga0066856_1000001528	F068147	AGG	MKKGDKDWDYQWISDSEIVNVFIPKNTHLANWEELKQKIQLLQQVEIDNHINSSIVNLYNDRNIEWVQYVRKMGHKYAAFWFDGCWPKSDGIEKKILQFIKNLDEEWITAVHPNFPDSLLLLNIDEFNAWPPKAPNFGSYDFWAERWLGEQTVELSKTILRNIVVCAPKTDPVNFLNGLMGKKYTDHTITRGARVVIKRKNIPTSPIYFVNTEPVNSGISSRLKHENFQQYVGTTAGFKLLYLAFKYGFDIDSTKYVWFDFDACSLKFKRLMVENWDGSNYPEFVKQFCKDNPEANTDLLKNVDKEWLNIIETFGGEHSWLDFWTQVKLCEHEFIEADLVKDYHKITDVLDKNKSTFFWASNIYSYVLLKVRSEPFTLEKSFADLITNLQTINRCWFLGTDVDDNELNCDVKSIIGFSTNDSIGKAI*
Ga0066856_1000001557	F042025	GAGG	MYEQFVQKIPIQLLAPWRNPTPSPNDDLKLIMDIDKNGITEPVIIGVGAFSRQVRLETGNHRIYLCPRMGMTHLPCIARVWNYCAFNNGNGDHAFNCPEITVKKEWLEEEYYAKPSDVLDIMALMLKL*
Ga0066856_100000158	F090893	AGAAGG	MPIERKDRSFDLIFDQVSMDHIPAEYIKEVQINLATGEKVVLTQEDLKKIKEESPKDDILKALTVDSMSKINLKLDYDAIKSDVMNGVTGFLGKHFDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066856_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences