Scaffold Ga0066855_10229376

Overview

Basic Information

• Taxon OID: 3300005402
• Scaffold ID: Ga0066855_10229376
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y
F061278	Metagenome	132	Y
F090861	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066855_102293761	F090861	N/A	FKATDEGYQEDQNLADLVRDEASDMISALKKGDVRKAKTSYKSIGRLLK*
Ga0066855_102293762	F006423	AGGA	MKTFKQHINEKVEYYLDTSKDDTTKYVATDGDYWYTGKVGMKGGSAFLKFAATRISRSYFEDHAKLKKITPEKLEKDALKKPSIISTVDFKKLYKK*
Ga0066855_102293763	F061278	N/A	MKSFKGYLKEDVAWQQSASTKIFDFSQIQYMQIPLTSSTMEWIFQVQLPRATVFHVT