NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066855_10106709

Scaffold Ga0066855_10106709


Overview

Basic Information
Taxon OID3300005402 Open in IMG/M
Scaffold IDGa0066855_10106709 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)882
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F010479Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0066855_101067091F010479GAGMKSFKQHLREFAQFSTSDIVFKNRGQGSGSTALNIPISGPMFKRIWPDTIRTTVFHTTDLAGLEKLKKLEGGKKSISAFFSMMSRYMETGVATGGDVHVVVEMEADVLVSAKDDIWS
Ga0066855_101067092F000245AGGMKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMKGKKGMMAFNYQLEDK*

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