Scaffold Ga0066855_10056306

Overview

Basic Information

• Taxon OID: 3300005402
• Scaffold ID: Ga0066855_10056306
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1197
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023875	Metagenome	208	N
F048555	Metagenome	148	N
F049935	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066855_100563062	F023875	N/A	MKHFVLLLYNFYRYMVTFLYGVFAIILCLYDITYTHSLFWITMLFLSLIQFFAYANGLRAQLERQFLKDYNEAVKKTLEEQQQEEYNQIRNN*
Ga0066855_100563063	F048555	N/A	MKSVTITIGDYDLEIIEQLFENEEKFEPSDPRDELMIEVMRQVKDNPKVDLGADEAAEYEKAKTRFSKNLGADGKRIVKRELPITNKIS*
Ga0066855_100563064	F049935	N/A	MQTDIDFEFWDAQIKHFISIIKSDSASKKNKKAAKTHLIEIQSRLKRDVRDLNKHIKELEAQL*