Scaffold Ga0066855_10052164

Overview

Basic Information

• Taxon OID: 3300005402
• Scaffold ID: Ga0066855_10052164
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1240
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032623	Metagenome / Metatranscriptome	179	Y
F036269	Metagenome	170	Y
F064110	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066855_100521641	F032623	N/A	KEHNIKGWSDRQMNVKQLIVGTLVSTIVGLSGYMVGTYYGSIRMLDTIYGNVESELDILETKLESVSTKKIESQLEQLKIKVLNKVPSRQDVIDMSAQVDEINERIVMLASETQSLISDLKYSVREDLNKTTTDLTNKVDNTITTQSDLVKKEIGKLYDRVDVLHKDLEEVSTLIDKAKNTFFGKSVFKEKK*
Ga0066855_100521643	F064110	AGGAG	MPRAKKKTTTKKRAGRKSTPRRKTTDRRRSNPGDVFWTKVIEGWKKIFSPAK*
Ga0066855_100521644	F036269	N/A	MKGSPIDSIIIDLILDHYNMLSVDHKKPILTDNDFDDIVAYAQEVYYKKIMEETPIGIEGEA*