Scaffold Ga0066855_10001180

Overview

Basic Information

• Taxon OID: 3300005402
• Scaffold ID: Ga0066855_10001180
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6175
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029900	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066855_100011806	F029900	AGGA	MNKIIRLLLIGMVSILSAQTATIKNSIIGYSTLGDTVSFDKPYLWSFVKSDDSKWMASIFVEAPWSDESVYVEELFYKPYSDKFTIGLGRQAIPFGSNVPYLDLTRGDKFTYQTPTEHDVGLLYFGDGVSVYGGIGNFFIETYYGSDIENSWEDYSTTRLSYEWKNQFVGFSYDNQDRQSLDISGYSKYVDYVSEVGLSHDYQWIRAIVKPGLYGVSLLVGYETTNGESQALYGIAWQYGEPNRFLSTELSGDGDLKVKLYYSFNLKIGKEDE*