Scaffold Ga0066857_10011816

Overview

Basic Information

• Taxon OID: 3300005401
• Scaffold ID: Ga0066857_10011816
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3157
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007052	Metagenome / Metatranscriptome	359	Y
F012279	Metagenome / Metatranscriptome	282	Y
F016675	Metagenome / Metatranscriptome	245	Y
F039176	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066857_100118162	F039176	GAG	MIVDRNSEFGGIDLSLNRSLEELISSYFEAHGAGIELDEDTRPEEIDAYYALENYLADMGAI*
Ga0066857_100118164	F012279	GAGG	MTKRERVEGIENGKRMVERMTIENKLDDLRDATARLAGAEVKVDMLRDRKWILVEELKALGHDFTTTCEGMDVVLSAPPSMRF*
Ga0066857_100118165	F007052	AGGA	MENNETYWVAKLSKKGEFLSSEIFESLEEARIWAMKEAKLLISHIEMLRMTNVGDIVVEIDKHFFGYEASSDEIIKNSVRVI*
Ga0066857_100118169	F016675	GAG	VDYETTLPPWHTGHEKVEAEDLNSVKEKFDRKHEAARIYKITEVIYDQRLVAS*