NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066867_10242519

Scaffold Ga0066867_10242519


Overview

Basic Information
Taxon OID3300005400 Open in IMG/M
Scaffold IDGa0066867_10242519 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)653
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026716Metagenome197Y
F066235Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0066867_102425191F026716AGGMKCCKREVYAVQAGDYVGQMFTVVEPGKDFVGCLSLPLVENIKVPRESFENGRNNDIIKFVERLPKRVYSVVEAQYRKNEDPDNRRQQLNTPNVSHSEVGSEDDRV
Ga0066867_102425192F066235N/AMRNDNQNSAEDDEELKEIIERALKENIKDRKTFKRKKDLADRLSAIISEYMDSYILLGYDFNGNHFDIKLAATPQKEEALNSFLLKYFAAEVQSIKGINPPGSDEML*
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