Scaffold Ga0066867_10156232

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10156232
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 848
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F043075	Metagenome	157	Y
F087171	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_101562321	F010273	AGCAGG	MALGGLLTVAATEWLNLSPELTEQVVGAVIIIVPAYIGGQGIVDAMKEYAS
Ga0066867_101562322	F043075	AGGA	VMINDLEWLKVFGVNGGVLATVSLSDFELALKILMLFLTCVWTAVKIVKLLKEE*
Ga0066867_101562323	F087171	N/A	MPNTYNWSRLEPLVKTEEVNGSEQKVVITLVAGLTAQSDDGYSSYMDSAINCPLDPDNFIPFDDLPESWAIDKANSVAEEGGWKDALDKQIEAAKARPLPAKFPWQQAGEAPAE*