Scaffold Ga0066867_10068432

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10068432
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1369
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F011337	Metagenome	292	Y
F023211	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100684321	F023211	GGAG	VHEMKTFKQYLKEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDLSGLKRLKKLEGGKK
Ga0066867_100684322	F000659	N/A	MKTFTQYLEEASKYIVSKNPHDKKWYVMGHVGSNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISSA*
Ga0066867_100684323	F011337	AGGAG	LLRFKQYIAEIGVNPFQIVGKPAWTESLSTMLFDLPRAGLKDVKIPLSPAIFRRIWPKPVRTKVFHLTDGDGVPKVKKMQGGKRSISAFFNIEPIVLDTGIKSEGGFILEMIADILIASQDDLASQPDKTGRRWVSLSSLMNKPTDADPGLGGGAKLKKMENDIKEMLINIIVDHSDITPVPNVNKAWSYLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHVVTGDDPEDWDETDFGLPIKVWGDRGDAADYIIRTVQKIKL*