Basic Information | |
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Taxon OID | 3300005400 Open in IMG/M |
Scaffold ID | Ga0066867_10068432 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1369 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000659 | Metagenome / Metatranscriptome | 952 | Y |
F011337 | Metagenome | 292 | Y |
F023211 | Metagenome / Metatranscriptome | 211 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066867_100684321 | F023211 | GGAG | VHEMKTFKQYLKEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDLSGLKRLKKLEGGKK |
Ga0066867_100684322 | F000659 | N/A | MKTFTQYLEEASKYIVSKNPHDKKWYVMGHVGSNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISSA* |
Ga0066867_100684323 | F011337 | AGGAG | LLRFKQYIAEIGVNPFQIVGKPAWTESLSTMLFDLPRAGLKDVKIPLSPAIFRRIWPKPVRTKVFHLTDGDGVPKVKKMQGGKRSISAFFNIEPIVLDTGIKSEGGFILEMIADILIASQDDLASQPDKTGRRWVSLSSLMNKPTDADPGLGGGAKLKKMENDIKEMLINIIVDHSDITPVPNVNKAWSYLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHVVTGDDPEDWDETDFGLPIKVWGDRGDAADYIIRTVQKIKL* |
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