Scaffold Ga0066867_10065125

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10065125
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1408
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009558	Metagenome	316	Y
F024883	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100651253	F009558	N/A	MSSYRNKSWTARHYWVNQFGVIEHDIFAHIPPQHYVVKWKEGFERKEKHFDNKKEARAFFRTVRKTATHFIRKVKWH*
Ga0066867_100651254	F024883	N/A	MKKRKQSRLWKEVLDTVEAFLINPDYAPDPEHVQLYITTKDGGIVELHIGHDDEGEILKTFDSFDSEDDLEEQRIMERMEDPEKEILLN*