Scaffold Ga0066867_10034999

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10034999
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2008
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093988	Metagenome	106	N
F095617	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100349991	F093988	N/A	MLPKTIQYKRHIIKIRYIGRKESQDLDCVGMFVPADNEILIYKNQSMKNLLITFLHELYHLLCTKDNINVGKCGEEKLVDKLSESFVRLLIHNPKLLGVFQKLLK*
Ga0066867_100349992	F095617	N/A	MNLPKIELNWEEIVVGATTGVLRQTENMRQKISWGSGADFDWYKKWGQTISGSLAEQALAKKMQSYFSHSVNNFHGSDLKINGKSVQVRSQLESKKTNNLIVRKGYKKTDYYFLVLDDLPTFYFAGYVAPHNIERLGEWTNFHIQSRPYVWSIPKEKLTPLEKFKYER*