Scaffold Ga0066867_10025707

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10025707
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2396
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100257075	F022754	N/A	MNELIITIMLVIPSPHKLVNWSVNEVPTQIQIIHESGLEVSYNAAPVSCKFQPRHKREMVFKSPNARCYSVYDLSSPRFIRHPDHWYKVKLPENLGE*
Ga0066867_100257076	F002078	AGGAG	MDIAAMFEGQGWFAIVGQIVLIFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNEVEKEIDAAKAKVRDRSGMPDVLDGM*
Ga0066867_100257077	F015741	AGG	MFLTGCSGFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSKNNDIYREVCKKNKSMADKMKDKA