Scaffold Ga0066867_10024784

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10024784
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2450
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011291	Metagenome / Metatranscriptome	292	Y
F025764	Metagenome	200	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100247842	F025764	AGG	MMEKITSVKDLINIDHDVASVSYGGLAGMLVATVKWADKFIRKDEPALALKLLEQALKENGKVNDVVERYNRRFNAESEKV*
Ga0066867_100247846	F064626	N/A	MKELRKVTEKIKKVLIDAERGNEEFPWIVDKLSLIKMYDMGLPIHMVLGLIDEFVEDVEERKRIKALEGFDEEHVRKVYDKVNVKWNDRNIN*
Ga0066867_100247849	F011291	N/A	MDKYEINVWKDAELLSKEVVEFESNEKCYDYVMDKHYAPGTWTGSHQNKNGVTLNRPPLGIRITWAKRTKDNYIYKPKKLTAEEKKLQR