Scaffold Ga0066867_10015139

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10015139
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3253
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F005685	Metagenome / Metatranscriptome	393	Y
F013815	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100151392	F013815	GGAG	MYSIQYEKTLPPWHIGVDKVEAETKEDALKEFYKRHDSTEDRVRSVNKMQSTYPVKVM*
Ga0066867_100151396	F005685	AGG	MRKFNEYTSFEDKILGTLKKGPCDLMTLSHKLKEDILPVGSMLEHLRVFDKVEMYKEKWQIKKKK*
Ga0066867_100151398	F000245	AGGAG	MKTFKEYSYQQKLDKYVSDEIKKRKLAKFPVNATDDHKMKKEKPTFKFPSPTGENMIHVWLRPMAKPAKSHTKAFNYQLEDK*