Scaffold Ga0066867_10013973

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10013973
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3398
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F011494	Metagenome / Metatranscriptome	290	Y
F047104	Metagenome / Metatranscriptome	150	Y
F081424	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_1001397310	F081424	N/A	MRDRIELEEIFEADPQARAEFNAVCDQWQNEAIAAQDKEEVCWCKFFESCSLCFGKK*
Ga0066867_1001397311	F011494	N/A	MRKYSVVDEEGVVRSFTQNVGEADHTALNDAIELAGRAGEDVVEHLADGTRVVVWEMGDEEPCGEEPWEGEDRFADGDALASAGFGTDEDYGCFGDE*
Ga0066867_100139736	F007550	N/A	MRDKMKKIISLLLLVGAVSANAASLELIVKKQKTLPNGNAYGLESGIYFELTDLEPFVMYKLQYSEDLKSWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRIVVAW*
Ga0066867_100139738	F047104	N/A	MRNQMTLTEIRRYAADKRKRQAKRDTFTLNGNTYTVSNDPKHQADQLAGYQGRNPK*