Scaffold Ga0066867_10006775

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10006775
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5126
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015147	Metagenome / Metatranscriptome	257	Y
F021787	Metagenome	217	N
F025853	Metagenome / Metatranscriptome	200	Y
F033643	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_1000677510	F021787	N/A	MLFPVMRDMISCEEVFEADPQARAEFDAVCDEWLNEAIDAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV*
Ga0066867_1000677512	F033643	GGA	MTFKNGWEISVQFGNGHYCSNKMKDSSSRQSETAEVAIFAPDKDGFPREWWSYDETLDDVVEQPEESYVNGWLTTDQVASIINIIANKNENKSNSN*
Ga0066867_1000677513	F015147	N/A	MIEKIKWLVSDLGLNEFNAWLWIIGGAALTAAVLVLLSGGFDEVFRYWRVFFLNL*
Ga0066867_100067756	F025853	N/A	LTLAAVCGIIRVLKEKKENKMKKFLVNYIPAVHEGQENKEDKSYSYRVEMDEQFANRSEKDESAGMAAKDSESGLWKRFRWDRIQSAVAI*