Scaffold Ga0066867

Basic Information
Taxon OID	3300005400 Open in IMG/M
Scaffold ID	Ga0066867_10002505 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005400 Open in IMG/M

Scaffold ID

Ga0066867_10002505 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8838
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8838

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (69.23%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F005217	Metagenome / Metatranscriptome	408	Y
F009367	Metagenome / Metatranscriptome	319	Y
F027016	Metagenome / Metatranscriptome	196	Y
F044141	Metagenome	155	N
F051204	Metagenome	144	N
F055786	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100025051	F005217	N/A	HDPNLGVSGEDPRFYLDLVDASILAQGGKTEVQKYCLGVILLNHSVHKLFTPEILSYYTELLERIHKYKVFYSIPNYRIMDEFAFWVLLSRFSLRTSLFGDQDVSQTFLEKKHENHFNPIVLHYTTSCEEEFADWAPEFFCLSRSTEEREESDLAAGGIYNINPMMREELAMSMW*
Ga0066867_1000250510	F002874	GGAG	MKEKNMKEKIDLSLNRSLQELIDSYWEFIDNTEGDDSANWGQETQEDFSALEGYLMKQDIL*
Ga0066867_1000250518	F027016	N/A	MEELILEEQELLIEEEALFLNREMLTEVKNLIDDINDIKSPNHLKQFIHPQWGSILGSEEDIRLAVLQDEVELCEQRVENDSDSIPHLGYMLYALKARIKELS*
Ga0066867_1000250522	F044141	N/A	MNKRIKSKHQHHEEVIRQQIEEEIFQDRNVFFEKKLQEATEKYVKRIDYLVGANNELMRELKRVESESAGYISIPNAAADCIVLEENF*
Ga0066867_1000250525	F055786	N/A	MICSYCYDTQIVGEYDVGHWWNNNPDSVYVCSKKCYTELEKLVKNRTWMEHKPEAIFGKKKKVKKEKVIESITDKRFTSNL*
Ga0066867_100025054	F009367	AGCAG	MKEVHSQLVDVVLLTHEDGSTMLCRGGEDAVRRFWEIWPIVKAEFTGEKQLLRWIVADPPIQP*
Ga0066867_100025056	F051204	GAG	MRIKIHSKHVDEKLKAAVKVMCEYALARLGVSSRITKNLKLSVHFGHHISEGEAKVAKSANRYRPRDFKINLDHHRMEKDDYGRSLEDTEWGHRVLRTLAHELVHVEQYIRGDLTWRDSGLLWKGNNCDPKGLLNYYELPYEIEAYGREYGLLVGFLLVWNDVEKEVEDILNDLV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066867_10002505

Overview

Ecosystem & Geography

Associated Families

Sequences