Scaffold Ga0066867_10001932

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10001932
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10234
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034601	Metagenome	174	Y
F058435	Metagenome / Metatranscriptome	135	Y
F075451	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_1000193213	F058435	N/A	MITMLQVIFGFVFICFIGGVFFYIIFDLKPWRRDSQLWDPENGPAPVFLKFKKFAQQKFFNRNTWRHIKSYYAYYALALIIIAVLIGN*
Ga0066867_100019325	F075451	N/A	MTSQVPKRTRQIQRHYLDKKQAEKHCIDIEQYFEQELRSYMKYAVNVILQGSILTHRQRVDFIRGWMRSWLSDDKLHKRLHKHKNSSRPT*
Ga0066867_100019327	F034601	N/A	MEIVDTNFVYAFIVAWNDTSRGVFLTEYFASLDECMSYLQSWIHDPTQVNLACVKITD*