Scaffold Ga0066867_10001624

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10001624
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11108
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F032237	Metagenome / Metatranscriptome	180	Y
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_1000162411	F077161	N/A	MRNLSVASIQERFDEHKKLHRFEVDKLFEKIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDMVTGKIEKVQDAITKKDIKKAVHEQSFNFDERLLQTLSWNMKQAHHVIGHFSTKFDNPYFRSRCLFTKQYDLIPDYGYQFYGDTWRMMKTSMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWQKSMDYIIDHCVKDVKMTYEGLLKVEQFNNIGRTKA*
Ga0066867_1000162412	F090238	GGAG	VHFHVEEGEESHGEYNSHDGTTEIWLGGHMTIWGLFDTLVHESLHEAIEEVVDGTTEKQDHWAIQRLCF*
Ga0066867_1000162414	F032237	N/A	MTEDRFIDKTTSLKTVERVKFSLKNFSKGAKVEISWAFNPEDSMHVDQFLETDPSKNSILIALQGFKTLVESNLGVKILEDE*
Ga0066867_1000162417	F011190	AGAAG	MGMIRQSIHNFIGGLKKSFSGKDYLRNINQCNKCGKPSFFASCLKCEVDDAYRGYKYTK*