Scaffold Ga0066867_10001428

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10001428
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11839
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F013467	Metagenome	271	Y
F025853	Metagenome / Metatranscriptome	200	Y
F043619	Metagenome	156	Y
F066699	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_1000142811	F006483	N/A	MGRYIHTNCTYEQNHTEGTYTFTGPCRGTGKPYSVTILGHELWDLNQGELLQVALKSLSADDREFVASGYSPEGWAKLWA*
Ga0066867_1000142822	F043619	N/A	MTDYSEEEQYWKRENGEVIAVGDMNEHHAKNVLRKMLKKSRQRGLDALEMRDKMRLISGMLEDIRSELL*
Ga0066867_1000142826	F066699	N/A	MKIKLPIYWDFKNQEESEVIANVPNESVKKVFMDFLMQKDYHERREWLVKNVPEINLNIPKELF*
Ga0066867_1000142828	F013467	GAG	MTFGDLRNWVWCEKCLEWKDADEVCFIGIEEDSFGKDVLHFLCDKCDLENKNNIVSSATKPRG*
Ga0066867_100014289	F025853	N/A	MKKFLINYTPAVHEGQENDSSKSFFYRVEMDEQFANRSENDNSAGMAAKDADSGLWKRFRWDRINSTVAI*