Scaffold Ga0066860_10002425

Overview

Basic Information

• Taxon OID: 3300005399
• Scaffold ID: Ga0066860_10002425
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8214
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039346	Metagenome / Metatranscriptome	164	Y
F044590	Metagenome	154	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066860_1000242513	F044731	AGG	MIFEDIYEKYEHLTVELIENEEGSPLEVAGAMMGQAMKLYKMSLSHEDFNSLMTIITHASGLEGDRFIYDDYDTTNETKH*
Ga0066860_1000242515	F039346	GAG	MLTSFVITLIECLEIAFITLLISQTKVNKSTITIYASLGLLGGLLSAYFLHDILENYEWLMYAILSSLFFYLFVKNKEVRQHIQRHVDDISQSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAGLAAFVAVMIYMFARDSKVKVYIFKFGYWAYLVFAIWFGYEALEHLHIL*
Ga0066860_100024253	F044590	N/A	MIIKINDRVEIRPVGGGILRDGIITSISISKNAELDPAGERGVNVEEFDLYNELPGSICYTDVTFNDEDDESGKSRWAYFGQIKQNE*