NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066858_10057906

Scaffold Ga0066858_10057906


Overview

Basic Information
Taxon OID3300005398 Open in IMG/M
Scaffold IDGa0066858_10057906 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062833Metagenome / Metatranscriptome130Y
F066852Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0066858_100579062F062833AGGAGMADQIRYGAGGLPYVGPGGTSAPAPEPVVEETPEEPEVTVTVIEDDTPLTDEEVVTKAKGNGK*
Ga0066858_100579063F066852AGGAMISKEVVEERKQTIQGDIERLEKTIAEVGKQQDQLQANMFALHGALQQCDQFLEMFDKENEKDG*

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