Scaffold Ga0066858

Basic Information
Taxon OID	3300005398 Open in IMG/M
Scaffold ID	Ga0066858_10011377 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005398 Open in IMG/M

Scaffold ID

Ga0066858_10011377 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2686
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2686

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y
F005685	Metagenome / Metatranscriptome	393	Y
F034603	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066858_100113771	F000245	N/A	TFKEYRYQQKLDKYVSDEIKKRKLAKFPVNATDDYKMKQGKPVFKFPSPTGENMIYVWLRPMAKPANKDTKAFNYQLEDK*
Ga0066858_100113772	F005685	GAGG	MKKFNEYSSFEDKILGTLKRGPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKK*
Ga0066858_100113774	F001930	N/A	MKNMRVGPTSQRSTPDSFSCQKYLGKMLRFKQYLKEGVAWELSASKMIFDFSEVPNMKIPLTSKTMEWIFKVQLPRATVFHVTSGIGFEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDKTGRRWVELYNIDPKEKMHKELEKMVIDLAVKHDPKNKEYLKTVPEIGLGVWWKLQTDFKDDGKKLSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTDIIPKLGKIPHKHWKSAKELSTYISQVADAEIRSMGRSKG*
Ga0066858_100113775	F034603	AGAAG	MITFKQYLKEEPPKWTESLSTMLFDLPRAGLKDVLIPLSPAILKRIWPKPPRTTVFHLTDYTGVGKLKGLQGKQKSISAFFNITPRAIEYGVATEGGYVVELIGDILAAAPDDLSTRPDKTGRRWMAFSTLINPIDYGHFGDGIGGGKKLKGMENDINEMMIEIIMKYADDPGKSGMPNVNKSWIALGKEYKREGKILSQIIKDYIDGMEKIMKKYSAKLKSVLLDYVKIRASKPDPDSGDVPEWDELVVNNFKIQKIHVNPEFSPDFEDDDDIDGFPFELYDDAGDMVDYINRKTLDIKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066858_10011377

Overview

Ecosystem & Geography

Associated Families

Sequences