Scaffold Ga0066858_10003257

Overview

Basic Information

• Taxon OID: 3300005398
• Scaffold ID: Ga0066858_10003257
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5224
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F032241	Metagenome	180	N
F038425	Metagenome	166	Y
F056907	Metagenome	137	N
F061287	Metagenome	132	Y
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066858_1000325711	F061287	GGAG	MDKHDRETMIKVLMKLKLQRKILDRMRDNEISSLFSLLKKYVT*
Ga0066858_1000325713	F038425	GGA	MDGEKSRVHCPKCDKLMWWWGYASSYTGDGSSELGLGCENPECDGYEILPEDVYDAIVTEEERIDA*
Ga0066858_1000325714	F032241	N/A	TEDIRDKGMYYPIIVSPFVKTDNNELILGDMASKRDDRKWWILDGERRWLSAVSLGHKTIDAMVRTDLTMLEMLEIQFASNTKRLQVTITEMSKAVLRFRDEYKKENGEYDEADFIKSLCSLTGFSSAYFTMVEAINRADDDMKDSVLADEVGGYAPYEIEKATKDEHFRRGITDAYLESEKQIGALVPRALKYDLKVIEAEGNLNPSEKRLLAKQMVNDFTHKGGRTRDSEPHFLLYKQKAMKFLREVQHWNLNGLKNKEVLTLVGLIEGVYNHFKEDRRLNGQMFSRKTGENIFGTKETGGDSD*
Ga0066858_100032573	F074138	GGAGG	MDWSQLYIHPSDDTTDDDIRDFVEWVSRKAERLGFRVELKRHRKVASGSSDTMSTNPLEQSNEKH*
Ga0066858_100032574	F056907	N/A	MSGNAYYIPGDTGVGTKLPIGEYEATITALDVVDNVICGKFIADVFKPVYTVQHRDYPKADIKDNGIFRYKEKPGYNYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDMIDGFSVIIEVSYKNFVNESGNPVRYPVGTLRKKVGEVPF*
Ga0066858_100032575	F021867	GAGG	VELKGCINKEDNIMDNNVEQVDWGKVNRGKVRYGFALELYKRGGDLKPSEIGKIEAFVEYVMEGPDYYPTDEGKPDKSRPKLMPVEECKKVITTESEGSKAFVKAMVHIDAEGLNDNDLEKVLQALKAGKITMDNLQASLDKIQIIKSSYE*