NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070659_100788865

Scaffold Ga0070659_100788865


Overview

Basic Information
Taxon OID3300005366 Open in IMG/M
Scaffold IDGa0070659_100788865 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010678Metagenome / Metatranscriptome300Y
F089982Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0070659_1007888651F089982N/AVCLFFNTTFLLQGLILSNALRAQKSAEDEGCTMALNNLRSEVIELRNEGLEKDKILNSLLNKIKEDKATSKAQAEAQKCEIENLQKQLAEAKLKCATAEAVRDASDYWKNHWDKTTAELRSSKERCYEKSMKCV
Ga0070659_1007888652F010678N/AEPAKEKSLETREKETEAAEQILAEETATATPEAFSDALNYILRHASGKKLTEKEKREAQFYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCREMARSFGFPTLEDGLSVLSKDESADSLAYNSLKVRK*

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