Scaffold Ga0008090_15880285

Overview

Basic Information

• Taxon OID: 3300005363
• Scaffold ID: Ga0008090_15880285
• Source Dataset Name: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 941
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location

• Location Name: Amazon Forest, Brazil
• Coordinates
  • Lat. (^o): -10.0
  • Long. (^o): -62.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005101	Metagenome / Metatranscriptome	412	Y
F015010	Metagenome / Metatranscriptome	258	Y
F029059	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0008090_158802851	F005101	N/A	TSVECECVMKDELTTILDATRAAQAELADYLVSADRNAELTIAKLVGILDRRDVVRAMRLLRASERPGRAPQPTLAEAS*
Ga0008090_158802852	F029059	AGGGGG	MGRSDEYRRYAAECVEMAGVFHEPKARATLLLMAQVWLRLAGQGELQDAEEADAGQGGA*
Ga0008090_158802853	F015010	N/A	METATEYRRFAQECRRLARDAKTERHRKIMEDMAQAWDTLATEADKEASHAPP*