Scaffold Ga0070671

Basic Information
Taxon OID	3300005355 Open in IMG/M
Scaffold ID	Ga0070671_100163981 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005355 Open in IMG/M

Scaffold ID

Ga0070671_100163981 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1879
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1879

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y
F012935	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070671_1001639811	F012935	N/A	LLAEGDYGRPSETSARLVRLADKGPDAGIHVVAWTDGYATAERALRRAGIGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLLAFAKEGFRSTP*
Ga0070671_1001639812	F006575	GGAG	MTEAASPYLALRQAVRPAILACRLLAGDQERAGKLATECEDLLFLSSELLKAAGRARLLGPGPGQAPLGPNDDGGERQAQLVDAYADAGLLWAKVVGSCLALAGALIERGDWDDVRALASFLASSGEETAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGGAISALRAVLREVPEEYPDRNREVNRFLPPLAAAVGALMREQQVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRPDRDTT*
Ga0070671_1001639813	F001698	AGG	MSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGQEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTGSANGTGRRDRNPR*
Ga0070671_1001639814	F002850	GGA	VTGIHADIDALKGLHGALARYRHAQRDVTARGEDQVRATRASLEEQASQLRAQLELCQGEYAGCRERAAQAGPEDLPVDCSGYARAVAQATERLEQIQLWQQRIDAEASEFSGVAGRFAALLADDLPRMEEH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070671_100163981

Overview

Ecosystem & Geography

Associated Families

Sequences