Scaffold Ga0070671_100026346

Overview

Basic Information

• Taxon OID: 3300005355
• Scaffold ID: Ga0070671_100026346
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4777
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006269	Metagenome / Metatranscriptome	377	Y
F008693	Metagenome / Metatranscriptome	329	Y
F016613	Metagenome / Metatranscriptome	246	Y
F040272	Metagenome	162	Y
F051497	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070671_1000263462	F008693	N/A	MQGPRKFVEYWRWRYRDPKTGRICRTLFQLSEREAAELPEAERIEGSMLLREVDADDFPETGPEVHRFTPESQQSP*
Ga0070671_1000263464	F051497	AGGAG	MSLEALWYEASPYAYFVVGLASALFSNSDVGFVFSALLLTASFTILRLRRIHRSPARVESRKYSRPG*
Ga0070671_1000263465	F016613	AGGAGG	MSLLQQIIDSSLVSRQRLMQSREFYAPTERKAPARVALARWTSRTLEQPALGVARELAGLSEPELDELEAEFRRFPIRQPPQWLRYAVVVGIVLMALAGLGLGLQALMNLGETAARTLQAVSVACLLIGLVPLGAALISALGALQLDLSYGTVGLYVGKLDEQHPWLYDARSLTRQVIAEEYRQRTLNERGLLRGADYIMMRELVQAQEALARVRAARSVAEQFQSLPVAAQATVHEPRLVRVGAARDHHESLSAETSRAQAGRPGQ*
Ga0070671_1000263468	F006269	N/A	MSPLTEFFCWWVIDERTGERRLTRFKLTRVDAQRAFPGAEPDLQTREVRNLPDVDELPPHSRPDGDWQ*
Ga0070671_1000263469	F040272	AGGGGG	MRTATEDEMRTALRQASAIAAVGGQRSLRQTLGLAHQIYNALVRLEPDGRARRIRLIDAIFGSVPRDADHKDGGR*