Scaffold Ga0070671_100024323

Overview

Basic Information

• Taxon OID: 3300005355
• Scaffold ID: Ga0070671_100024323
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4957
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017350	Metagenome / Metatranscriptome	241	Y
F020724	Metagenome / Metatranscriptome	222	Y
F061005	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070671_1000243231	F061005	GGAGG	VNRVFFGDLPTDAQAMLTRHLRVDFSHCIMKAPQWFSAWACNDRGHIIGIFTVEFPVWFEGKVTALVLDPRCLSRRTLRAIFTALFSKVKRLTAEVEPDNRRALKQVQRLGFIYEGYRPLGLEGTRDTIVYGMLKEDCRYLPGFEDDRPARTVPVFPGYVYE
Ga0070671_1000243233	F020724	N/A	MARLATILQIVSDVSLELGTTQIPVLQALGSSDQDIAQITALMGNVADELLLDPPYRDALGDGNWIYDPGLLVRKDRPTQDTDIVLFDPRLAIDGLKYRFLKAKGLEYGEEQRDFIARLNKLAGRNAPVIDLNIDDGRVQ*
Ga0070671_1000243234	F017350	GGAG	MSETPTLVRFYSGWERDGNGPDGLPAYRQTVRVRLDRPPLLSVEREAEEADILNHPEPYALYQRTEAVRIEVHGYPLALWPACLPHLFQMCAARDIHTVEQLAQLVTKTRRSEAAKTMPPDVLELADRARKMIELQSKAGQYEELITDLQSQVEVLKEQITEAAQTIASQKTMIDTLKLKAAA*