Scaffold Ga0070675_100013386

Overview

Basic Information

• Taxon OID: 3300005354
• Scaffold ID: Ga0070675_100013386
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6446
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035806	Metagenome / Metatranscriptome	171	Y
F095638	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070675_1000133861	F095638	GGAG	MPNFPNHDHDYDGRPPVGWQDDDPLLERLCRHHPERIPDELRARFRTDYARARSPLVAAALS
Ga0070675_1000133862	F035806	GAGG	MVGKRRRGRPRKNGHRYRNGNLRPSHDPAISPAQVAATQPHRQGLGDHAADQLAESELGRMVIRGVITRLQCLAGQRYAAQWRAYLATLDGPRSPQRGRGRGNPCGGCPTATDQRTCACDLARRLWARSTFALQAADPEAVVMIARVACWDVACPPWALPVLRRGLDALAESLGLTTRNKSPHVENLNPNYVRA*