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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005353 Open in IMG/M |
| Scaffold ID | Ga0070669_100006052 Open in IMG/M |
| Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8729 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan, Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044761 | Metagenome | 154 | N |
| F049057 | Metagenome | 147 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070669_1000060525 | F049057 | AGG | LTNARLGPLNSEGMVLASCLTILSVLLALGIGIRVMLQNDYRILANLRSSTHSFYYSVAGIEWSKNQIAELDIFPPTPADQIQSFANGAFDVRFSVPAVTGPLTARLTVRSTGTVDNATHVIEAQLTKAYELSDAALTVRGNPARAVLSGGEILISGTDHDQRNGTPRSGSKPRLAISASSETVRGLLSQSIENPEILDGASLAPLVAQSDYLPANFINQLAGDLCSVPTALLHPISTIGSLTIANQIWGSQSSPEIHCVDGLSASGDSITITGNVSGAGILVVSNADLVLSGSFHWQGLVIVNGQEVGLRTAGSSIKEIVGAVVLNETGAPSSTTAIMEIQGNLRLLFSREALKTAAELVPAATLTSAYGNLPFLVTQNYWRNVAQ* |
| Ga0070669_1000060528 | F044761 | AGGGGG | VRIPLAAGVVLTIATTIGNADAGYLIQLRNGNDYVTARYWREGNQVLFDTYGGVFGVEKNFIAQIIKTDDVAGLNSASYREPATNLLNRGLNDKKELRDNGSDPPLSRTKADDNDPIRGEFNRLKEKVSEVDGMLTAEIRELLNQITAFKNKLSRDSKLFIQYGREFNDAHELGSAVETALVSRTQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |