Scaffold Ga0074242_12092457

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_12092457
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2814
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068594	Metagenome	124	Y
F069852	Metagenome	123	Y
F100033	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_120924571	F068594	N/A	WQEVKKYVREECVIKANSLDEALEIHNEGGADYKEVHCFDEEITDEGTDENKSH*
Ga0074242_120924572	F069852	GAGG	MKIKVTRADIQQGEAGNSHECAISLALQRHFNTNCTYVSGAVDRDGPILKVDDRELKVSEKDIYNVGTFIDLFDDYVIIGDDVAIDETCIPQPFEFEVMEEK*
Ga0074242_120924575	F100033	GGAGG	MLEDKHCQIILKNEDEETNKILMNFDLILRTNDKRTKYEYFDVYDYKNNQMVASGIEIKK