Scaffold Ga0074242_11550612

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_11550612
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17519
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025263	Metagenome / Metatranscriptome	202	Y
F060451	Metagenome	133	Y
F097164	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_1155061219	F060451	N/A	MDDTGHLSVSLTLEDEFTLTRIKTAAKELKGRERDQYFWDRIVRFVCRERAYKFVADELGVIVDPNIGVFDDVKDDD*
Ga0074242_1155061223	F097164	N/A	MLAKKDFVSPPKLVAAAASLFGGEITLDPASSEHANSIVQAEKYFDWRNNGLKQEWKSKNIYLYPPRDVSLKSEQPKSDLLFTKISYFKKSNQRVWLETAYKKWLKREFNEGIILLTSSEVALISMQKIGIDLPLCILKEHPRLLEDNKKLKPIKHSKVFVLFLYASYSGLSNENP*
Ga0074242_115506123	F025263	AGGAGG	MAINSNQLHVAKIYPGNYTNVLRFWHEEKSVNFQNANGVDSTLTNQPIGGPVGVIFQPGWIAQQAVGYVDMSYQALGTSNQMSYYTKPYGSGQNSAEQPFLNADVIVPSPDFHKDVRADITDGIKVPATAYVYRASLRLSGGDLVSSGVAGADSTPELTLVPAVGEGLKDDGTVVSGQFGATLTGSNNAIANGSTASTNIIDSSSLAALGSETQWKLFTTVDLGGASASGLAQGSGIYDPRAAANKLSGDDKALAICEVCWIIPDEPPERQDVALQPDGLVESSTYTSTSPS*