Scaffold Ga0074242_11163521

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_11163521
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2367
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023087	Metagenome	211	N
F097166	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_111635212	F023087	N/A	VVNNLSNNDATKWGYFFALPLREFLNLISFQKAKQNHEYHQMKQNGIR*
Ga0074242_111635214	F097166	AGG	VDIKGANHNGFYVSNQMHKEYYLVIQEEEKDASGVYQNGDLFISKVKSVWNGVRNEIEWLDFDYTDYIINNTPSVTKKFLTDSPRTIRIDSDQSYHLYFIANERFGAYQYNIKAYSGYNATGSLLADGVVDNNIAVADSWDKIYFRIPVGPYDIGNIDPALYTDSLLGSTPSTALNGAASYTIHLEDNTNAQTSERFTFNVNQTCSKYNEVRVHWLNRLGGYDAFNFYMKSIHTTDIKKDTFDQQHHDWTGNTYSYDKQSRGT