Scaffold Ga0074242_10860470

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10860470
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4701
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015852	Metagenome / Metatranscriptome	251	Y
F024767	Metagenome / Metatranscriptome	204	Y
F068776	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_108604703	F024767	N/A	MPTPSNNRTMNHLQFELTMSNEQIPAFIRLVARKALTDLRTAAVDAGTTHVDPWIFWKLVKFAQAEPIKSGKYTFIRIYDEEHNSVDIQTLNS*
Ga0074242_108604708	F068776	GGA	MNYYYYQDAEVREQIDELLQQNATIQANLGTESTAEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR*
Ga0074242_108604709	F015852	AGCAG	LGRDIAIHLVKVYTPYLLAFLLGVIIAYKGCGEPETITKVVERPVPTIEYVDRWRTDTVRFVSKQLVTRTDTIYSEKVVTRLDTMLLVDTLRIVETWLSEVANYDTTVSDVRLTWSNYQNRTENLKVELRKKPLSWALGVHGLVGLQSDFVESYTPLFGIGLQGTVKKTYISANYGFNGQHFVGVGVGRTIISR*