Scaffold Ga0074242_10802968

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10802968
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010828	Metagenome	298	N
F047658	Metagenome	149	N
F101003	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_108029682	F047658	AGAAG	MDKNEVLLFIAERLDQITMMEQGRYSGKITREEQKLYQEAWSYIDPKAKVCFTCGRSPQLMSAALLNFYQLQAVETEKPKRRRKRRASK*
Ga0074242_108029684	F101003	GAG	MLYILSALSASVAAYLWIEVFAIDLLIKKWMGMADTYPLKPLDCRLCMSFWLGVLMCSVHSPEALLYVPLLSVLFERLMWRFEI*
Ga0074242_108029685	F010828	N/A	VKDKAAIDLLSDEELHELAQKLCNCPDDLIQEVVLLLLEMPDEKWQQINEGGYLRFYVVRTMMTMATSKRSSFSKLYDLHNHKRVDHDREDYDWEKEDDIALLETLMDELHWYDREVLKLWLEEGSYRKVGKKVDIPYKSIGNTVNKALEQLRDNYYAIHLERIIRERCRLPLD*