Scaffold Ga0074242_10466771

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10466771
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015079	Metagenome	257	Y
F063642	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_104667711	F015079	N/A	MVQAQIESIQGKGDWKGKHGTMYTFEIAFNDGTVGEANSKTQEPPYKVGDEVYYEIKREDQYGKKLKVSKNPPPPGGFQQFQPAKSNPNKDKQIIRGMCFKVAGMAWACNYKHKQFELPHEVMVKDVLDLAKKYEKAFNEWMEE*
Ga0074242_104667713	F063642	N/A	MQYTSTQLFDEVIQLATPQCVTNRDMTLVRKLKDLQNYTQRLEKIAD