Scaffold Ga0074242_10437981

Overview

Basic Information

• Taxon OID: 3300005346
• Scaffold ID: Ga0074242_10437981
• Source Dataset Name: Saline sediment microbial community from Etoliko Lagoon, Greece
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3229
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.482158
  • Long. (^o): 21.313175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022176	Metagenome	215	Y
F025263	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_104379812	F025263	GAGG	MAINPNQLHVAKIYPGNYTNVLRYWHEEKTVQYDNANGVSQNLANQPIGGPVGVVFRPGWIAQQAVGYVDLSYQALGTVNQLSYYTQPYGSGQPFSSASIIIPSPDFHKDVRADISNGIGAPAGAFVYRASLRVDGGDVVSSGIAGGSTTPKISLVPAVGEGLLDDGTVVSGQFGVSVTGSDSRIANGSTASVNIIDSSSLAALSTETQWQLFATTDLGGASGLAPGSGVYDPRASANKLAGDDKALAICEVCWIIPDEPPERQDVALQPDGLVESSVYTSTSPS*
Ga0074242_104379815	F022176	N/A	VAQLSQNELEQIQSYLAQQGVTFDATSTDASKRETIYAAVNQLTRNPAQVFGYRLDDFNFSRVAYHLGYNIATVPAGDYARLLEASNSIP*